CVE/CVE_R/R/util.R

#' Samples uniform from the Stiefel Manifold
#'
#' @param p row dim.
#' @param q col dim.
#' @return `(p, q)` semi-orthogonal matrix
#' @examples
#'  V <- rStiefel(6, 4)
#' @export
rStiefl <- function(p, q) {
    return(qr.Q(qr(matrix(rnorm(p * q, 0, 1), p, q))))
}

#' Null space basis of given matrix `V`
#'
#' @param V `(p, q)` matrix
#' @return Semi-orthogonal `(p, p - q)` matrix spaning the null space of `V`.
#' @keywords internal
#' @export
null <- function(V) {
    tmp <- qr(V)
    set <- if(tmp$rank == 0L) seq_len(ncol(V)) else -seq_len(tmp$rank)
    return(qr.Q(tmp, complete=TRUE)[, set, drop=FALSE])
}

#' Creates a (numeric) matrix where each column contains
#' an element to element matching.
#' @param elements numeric vector of elements to match
#' @return matrix of size `(2, n * (n - 1) / 2)` for a argument of lenght `n`.
#' @keywords internal
#' @examples
#'  elem.pairs(seq.int(2, 5))
#' @export
elem.pairs <- function(elements) {
    # Number of elements to match.
    n <- length(elements)
    # Create all combinations.
    pairs <- rbind(rep(elements, each=n), rep(elements, n))
    # Select unique combinations without self interaction.
    return(pairs[, pairs[1, ] < pairs[2, ]])
}