.gitignore

@@ -113,8 +113,6 @@ mlda_analysis/
 References/
 dataAnalysis/chess/*.Rdata
 dataAnalysis/Classification of EEG/
-dataAnalysis/Autism-EEG/
-dataAnalysis/chest_xray/
 
 *.csv
 *.csv.log

LaTeX/plots/sim-ising.tex

@@ -51,7 +51,7 @@
 }
 
 \begin{document}
-\begin{tikzpicture}[>=latex, scale = 0.58]
+\begin{tikzpicture}[>=latex]
 
     \begin{axis}[
         name=sim-2a,
@@ -66,7 +66,7 @@
         \addplot[color = clpca] table[x = sample.size, y = dist.subspace.clpca] {aggr-2a-ising.csv};
     \end{axis}
     \node[anchor = base west, yshift = 0.3em] at (sim-2a.north west) {
-        a: linear dependence
+        a: linear dependence on $\mathcal{F}_y \equiv y$
     };
     \begin{axis}[
         name=sim-2b,
@@ -83,11 +83,12 @@
         \addplot[color = clpca] table[x = sample.size, y = dist.subspace.clpca] {aggr-2b-ising.csv};
     \end{axis}
     \node[anchor = base west, yshift = 0.3em] at (sim-2b.north west) {
-        b: quadratic dependence
+        b: quadratic dependence on $y$
     };
     \begin{axis}[
         name=sim-2c,
-        anchor=north west, at={(sim-2a.below south west)}, yshift=-1.3em
+        anchor=north west, at={(sim-2a.below south west)}, yshift=-.8em,
+        xticklabel=\empty
     ]
         \addplot[color = gmlm, line width=1pt]  table[x = sample.size, y = dist.subspace.gmlm]  {aggr-1a-normal.csv};
         \addplot[color = pca]   table[x = sample.size, y = dist.subspace.pca]   {aggr-2c-ising.csv};
@@ -115,19 +116,19 @@
         \addplot[color = clpca] table[x = sample.size, y = dist.subspace.clpca] {aggr-2d-ising.csv};
     \end{axis}
     \node[anchor = base west, yshift = 0.3em] at (sim-2d.north west) {
-        d: interaction constraints% via $\boldsymbol{\Omega}$'s
+        d: interaction constraints via $\boldsymbol{\Omega}$'s
     };
 
     \node[anchor = north] at (current bounding box.south) {Sample Size $n$};
 
-    \matrix[anchor = west] at (current bounding box.east) {
-        \draw[color=gmlm,  legend entry, line width=1pt] plot coordinates {(0, 0) (.3, 0) (.6, 0)}; & \node[anchor=west, font=\footnotesize] {GMLM};  \\
-        \draw[color=tsir,  legend entry] plot coordinates {(0, 0) (.3, 0) (.6, 0)}; & \node[anchor=west, font=\footnotesize] {TSIR};  \\
-        \draw[color=mgcca, legend entry] plot coordinates {(0, 0) (.3, 0) (.6, 0)}; & \node[anchor=west, font=\footnotesize] {MGCCA}; \\
-        \draw[color=hopca, legend entry] plot coordinates {(0, 0) (.3, 0) (.6, 0)}; & \node[anchor=west, font=\footnotesize] {HOPCA}; \\
-        \draw[color=pca,   legend entry] plot coordinates {(0, 0) (.3, 0) (.6, 0)}; & \node[anchor=west, font=\footnotesize] {PCA};   \\
-        \draw[color=lpca,  legend entry] plot coordinates {(0, 0) (.3, 0) (.6, 0)}; & \node[anchor=west, font=\footnotesize] {LPCA};  \\
-        \draw[color=clpca, legend entry] plot coordinates {(0, 0) (.3, 0) (.6, 0)}; & \node[anchor=west, font=\footnotesize] {CLPCA}; \\
+    \matrix[anchor = north] at (current bounding box.south) {
+        \draw[color=gmlm,  legend entry, line width=1pt] plot coordinates {(0, 0) (.3, 0) (.6, 0)}; & \node[anchor=west] {GMLM};  &
+        \draw[color=tsir,  legend entry] plot coordinates {(0, 0) (.3, 0) (.6, 0)}; & \node[anchor=west] {TSIR};  &
+        \draw[color=mgcca, legend entry] plot coordinates {(0, 0) (.3, 0) (.6, 0)}; & \node[anchor=west] {MGCCA}; &
+        \draw[color=hopca, legend entry] plot coordinates {(0, 0) (.3, 0) (.6, 0)}; & \node[anchor=west] {HOPCA}; &
+        \draw[color=pca,   legend entry] plot coordinates {(0, 0) (.3, 0) (.6, 0)}; & \node[anchor=west] {PCA};   &
+        \draw[color=lpca,  legend entry] plot coordinates {(0, 0) (.3, 0) (.6, 0)}; & \node[anchor=west] {LPCA};   &
+        \draw[color=clpca, legend entry] plot coordinates {(0, 0) (.3, 0) (.6, 0)}; & \node[anchor=west] {CLPCA};   \\
     };
 
     \node[anchor = south, rotate = 90] at (current bounding box.west) {Subspace Distance $d(\boldsymbol{B}, \hat{\boldsymbol{B}})$};