#!/usr/bin/env Rscript library(MAVE) library(CVarE) Sys.setenv(TF_CPP_MIN_LOG_LEVEL = "3") # Suppress `tensorflow` notes/warnings suppressPackageStartupMessages({ library(NNSDR) }) ## Parse script parameters args <- parse.args(defaults = list( # Simulation configuration reps = 100, # Number of replications dataset = 'M1', # Name (number) of the data set # Neuronal Net. structure/definitions hidden_units = 512L, activation = 'relu', trainable_reduction = TRUE, # Neuronal Net. training epochs = c(200L, 400L), # Number of training epochs for (`OPG`, Refinement) batch_size = 32L, initializer = 'fromOPG', seed = 1390L )) ## Generate reference data (gets re-sampled for each replication) # Generates a list with `X`, `Y`, `B` and `name` ds <- dataset(args$dataset, n = 100) ## Build Dimension Reduction Neuronal Network model (matching the data) nn <- nnsdr$new( input_shapes = list(x = ncol(ds$X)), d = ncol(ds$B), hidden_units = args$hidden_units, activation = args$activation, trainable_reduction = args$trainable_reduction ) ## Open simulation log file, write simulation configuration and header log <- file(format(Sys.time(), "results/sim_%Y%m%d_%H%M.csv"), "w", blocking = FALSE) cat(paste('#', names(args), args, sep = ' ', collapse = '\n'), '\n', 'method,replication,dist.subspace,dist.grassmann,mse\n', sep = '', file = log, append = TRUE) ## Set seed for sampling simulation data (NOT effecting the `NN` initialization) set.seed(args$seed) ## Repeated simulation runs for (rep in seq_len(args$reps)) { ## Re-sample seeded data for each simulation replication with(dataset(ds$name), { ## Sample test dataset ds.test <- dataset(ds$name, n = 1000) ## First the reference method `MAVE` dr <- mave(Y ~ X, method = "meanMAVE") d.sub <- dist.subspace(B, coef(dr, ncol(B)), normalize = TRUE) d.gra <- dist.grassmann(B, coef(dr, ncol(B))) mse <- mean((predict(dr, ds.test$X, dim = ncol(B)) - ds.test$Y)^2) cat('"mave",', rep, ',', d.sub, ',', d.gra, ',', mse, '\n', sep = '', file = log, append = TRUE) ## and the `OPG` method dr <- mave(Y ~ X, method = "meanOPG") d.sub <- dist.subspace(B, coef(dr, ncol(B)), normalize = TRUE) d.gra <- dist.grassmann(B, coef(dr, ncol(B))) mse <- mean((predict(dr, ds.test$X, dim = ncol(B)) - ds.test$Y)^2) cat('"opg",', rep, ',', d.sub, ',', d.gra, ',', mse, '\n', sep = '', file = log, append = TRUE) ## Next the `CVE` method dr <- cve(Y ~ X, k = ncol(B)) d.sub <- dist.subspace(B, coef(dr, ncol(B)), normalize = TRUE) d.gra <- dist.grassmann(B, coef(dr, ncol(B))) mse <- mean((predict(dr, ds.test$X, k = ncol(B)) - ds.test$Y)^2) cat('"cve",', rep, ',', d.sub, ',', d.gra, ',', mse, '\n', sep = '', file = log, append = TRUE) ## Fit `NNSDR` model nn$fit(X, Y, epochs = args$epochs, batch_size = args$batch_size, initializer = args$initializer) # `OPG` estimate d.sub <- dist.subspace(B, coef(nn, 'OPG'), normalize = TRUE) d.gra <- dist.grassmann(B, coef(nn, 'OPG')) cat('"nn.opg",', rep, ',', d.sub, ',', d.gra, ',', NA, '\n', sep = '', file = log, append = TRUE) # Refinement estimate d.sub <- dist.subspace(B, coef(nn), normalize = TRUE) d.gra <- dist.grassmann(B, coef(nn)) mse <- mean((nn$predict(ds.test$X) - ds.test$Y)^2) cat('"nn.ref",', rep, ',', d.sub, ',', d.gra, ',', mse, '\n', sep = '', file = log, append = TRUE) }) ## Reset model nn$reset() } ## Finished, close simulation log file close(log)